Church & Nonprofit Payroll Services

Part of our nationwide Payroll Processing Services for churches, ministries, and nonprofits.

Run payroll without surprises. RemoteBooksOnline handles church and nonprofit payroll end-to-end, unlimited runs, direct deposit, federal and state tax filings, and year-end W-2/1099 e-delivery. Pricing is flat and transparent, with no per-run fees. For ministries with multiple campuses or state registrations, we tag locations for clean reporting and file the right taxes at the right time. CPA-reviewed accuracy and audit-ready exports keep your books tight for board reporting and grant compliance. All services are delivered through our centralized payroll processing platform with consistent compliance and flat pricing.

Why RBO for church/nonprofit payroll

  • tick Unlimited runs; direct deposit and employee self-service portal
  • tick Federal & state payroll tax filings; year-end W-2/1099 e-delivery
  • tick Multi-state support; additional states as a simple flat add-on
  • tick Clergy-specific settings (e.g., housing allowance fields where applicable)
  • tick Department/fund tags for reporting (worship, outreach, admin, school)
  • tick Quick onboarding (typically 5–7 business days after data handoff)

AI-assisted accuracy

  • tick Pre-run checks on employee status, EINs, and tax IDs
  • tick Anomaly flags on hours/rates; optional leader sign-off before each run
  • tick Year-end W-2/1099 prep checks prior to e-delivery or optional mailing

Transparent, Affordable Pricing

Full Payroll (CPA-reviewed): $50/mo base + $7 per employee. Basic: $40 + $6. Extra states $10/month each. No setup or per-run fees.


Estimated monthly: $85

Get a Payroll QuoteSee Pricing Details

Onboarding Timeline

Step 1

Data handoff (employees, rates, pay schedules, states)

Step 2

Setup & verification (banking, tax accounts, state IDs)

Step 3

Optional parallel run and sign-off

Step 4

Go live; we file taxes and deliver W-2/1099 at year-end

Frequently Asked Questions

Full $50 + $7/emp; Basic $40 + $6; extra states $10/month each.

Yes, use dedicated fields; we review setup for correct treatment where applicable.

Typically 5–7 business days after data handoff.

Yes.

No per-run fees; no setup fees.

Stipends can be tracked; we’ll advise on proper setup.

Yes; we tag locations and add states for a flat fee.

E-delivery included; optional paper mailing available.

Payroll Near You

Serving Los Angeles, California 90001 and all 50 states. Explore coverage by location.

View coverage details across all locations under our Payroll Processing Services.