Bookkeeping Services for Amazon and Shopify Sellers, CPA-Reviewed, Flat-Rate
Ecommerce bookkeeping done for you - accurate, timely, sales-tax-ready.
At a glance: Amazon & Shopify payout reconciliation • Fees/returns/chargebacks mapping • COGS & inventory (SKU-level) • Sales-tax support (multi-state) • A/R & A/P • Month-end close & CPA review • QuickBooks & Xero support • Flat-rate monthly
Request a QuoteBookkeeping for Amazon and Shopify Sellers, Stay Synced, Scalable, and Sales-Tax Compliant
We use AI-assisted categorization and reconciliation to map marketplace fees/returns, speed payout matching, and flag anomalies, then a CPA reviews every month-end report.
E-commerce bookkeeping isn’t just about tracking revenue, it’s about reconciling multiple payment gateways, fees, returns, sales tax liabilities, and inventory across platforms like Amazon and Shopify. RemoteBooksOnline delivers flat-rate, CPA-reviewed bookkeeping specifically designed for sellers managing orders, payouts, and marketplace integrations. Whether you're fulfilling from your garage or scaling a multi-brand DTC empire, our team ensures your financials stay accurate, tax-ready, and investor-friendly, month after month, without the guesswork. Get clean books, detailed reports, and full visibility into your e-commerce performance with no hourly billing or software learning curves.
Where Ecommerce Bookkeeping Fits in Your Online Sales Financial Workflow Ecommerce sellers depend on accurate reconciliation of sales, refunds, payment processors, fees, and inventory. Most online businesses follow this financial sequence:
- Clean up or catch up past sales, payouts, fees, and refunds
- Reconcile Amazon/Shopify deposits, payment gateways, and chargebacks
- Track COGS, inventory adjustments, discounts, shipping, and fulfillment costs
- Add accounting, tax planning, and outsourced support as order volume expands
If your payouts or sales channels do not match QuickBooks, begin with QuickBooks Cleanup or Catch-Up Bookkeeping. Once accurate, Monthly Bookkeeping, Ecommerce Bookkeeping, and Accounting Services keep inventory, fees, returns, and margins aligned.
Why Sellers Choose Us
Reconcile Amazon and Shopify payouts
Track COGS, shipping, returns, fees, and inventory
Sales tax prep support across states
CPA-reviewed financials delivered monthly
QuickBooks Online & Desktop support included
Start your first month free - marketplace-ready, CPA-reviewed, fully remote.
Who We Serve
Amazon FBA and FBM sellers- Shopify store owners
- Etsy, Walmart, and eBay sellers (multi-channel support)
- U.S.-based and international sellers doing business in the U.S.
How Our Ecommerce Bookkeeping Works
Free Quote
Share channel mix, order volume, and goals. Get a flat-rate plan.
Secure Connect
Connect Amazon, Shopify, and banks; import settlements & orders.
Map & Reconcile
Map fees/returns/tax, post COGS & inventory, reconcile payouts.
Close & Report
Month-end close, management reports, and CPA review every month.
Client Reviews
We support business owners across the country with reliable, remote bookkeeping. Here’s what a few of them say:
They reconciled Amazon payouts, COGS, and fees in just 2 weeks.
Patel J, E-commerce Seller
Clean books. No missed deposits. No spreadsheet nightmares.
Williams A, Finance Manager
Now I get clear margin reports every month. Worth every penny.
Kim R, Shopify Store Owner
They cleaned up 10 months of Shopify chaos fast.
Nguyen L, Online Retailer
Our accountant says it’s the best e-commerce report he's seen.
Johnson M, CPA
Frequently Asked Questions
Yes. We help Amazon and Shopify sellers nationwide with full bookkeeping support.
Yes. We support multi-channel reconciliation, including fees and returns.
No problem. We track both inventory models and categorize revenue properly.
Yes. We track all direct costs and provide CPA-reviewed reporting monthly.
Yes. We support seller sales tax tracking across all 50 states.
Yes. We support both QuickBooks and Xero, including marketplace payout reconciliation.
Fully remote, serving sellers nationwide.
We offer catch-up bookkeeping and reconciliation for all prior years.
Yes. We categorize and reconcile all return-related activity properly.
No. Flat-rate only, with month-to-month service.
See more answers in our full Bookkeeping Services for Amazon and Shopify Sellers FAQ →
Which Bookkeeping path fits your Ecommerce Store?
Ecommerce brands manage orders, payouts, fees, refunds, and channels. Some are months behind, others just need a clean monthly close, and some want full accounting and cash-flow support.
Most ecommerce stores choose one of these paths:
If you’re behind or payouts don’t match:
If you want a clean monthly close:
If you need deeper accounting and cash-flow reporting:
Trusted by Sellers Nationwide
We support Amazon and Shopify sellers in all 50 states - and beyond.
Start your first month free - marketplace-ready, CPA-reviewed, fully remote.
Featured Insights
See how virtual bookkeeping works, where it’s growing, and why businesses are choosing CPA-reviewed support.
Explore Bookkeeping for Amazon & Shopify Sellers by Location
Need Bookkeeping for Amazon and Shopify sellers help near you? View all locations.
Why Small Businesses Trust RemoteBooksOnline
Trusted by 5000+ business owners and 300+ firms
CPA-reviewed accuracy
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Want a flat-rate, affordable option for eCommerce? See our affordability guide.