Bookkeeping Services for Amazon and Shopify Sellers, CPA-Reviewed, Flat-Rate

Ecommerce bookkeeping done for you - accurate, timely, sales-tax-ready.

At a glance: Amazon & Shopify payout reconciliation • Fees/returns/chargebacks mapping • COGS & inventory (SKU-level) • Sales-tax support (multi-state) • A/R & A/P • Month-end close & CPA review • QuickBooks & Xero support • Flat-rate monthly

Bookkeeping for Amazon and Shopify Sellers, Stay Synced, Scalable, and Sales-Tax Compliant

We use AI-assisted categorization and reconciliation to map marketplace fees/returns, speed payout matching, and flag anomalies, then a CPA reviews every month-end report.

E-commerce bookkeeping isn’t just about tracking revenue, it’s about reconciling multiple payment gateways, fees, returns, sales tax liabilities, and inventory across platforms like Amazon and Shopify. RemoteBooksOnline delivers flat-rate, CPA-reviewed bookkeeping specifically designed for sellers managing orders, payouts, and marketplace integrations. Whether you're fulfilling from your garage or scaling a multi-brand DTC empire, our team ensures your financials stay accurate, tax-ready, and investor-friendly, month after month, without the guesswork. Get clean books, detailed reports, and full visibility into your e-commerce performance with no hourly billing or software learning curves.

Why Sellers Choose Us

Reconcile Amazon and Shopify payouts

Reconcile Amazon and Shopify payouts

Track COGS, shipping, returns, fees, and inventory

Track COGS, shipping, returns, fees, and inventory

Sales tax prep support across states

Sales tax prep support across states

CPA-reviewed financials delivered monthly

CPA-reviewed financials delivered monthly

QuickBooks Online & Desktop support included

QuickBooks Online & Desktop support included

Start your first month free - marketplace-ready, CPA-reviewed, fully remote.

Get a Free Quote

Who We Serve

  • tick Amazon FBA and FBM sellers
  • tick Shopify store owners
  • tick Etsy, Walmart, and eBay sellers (multi-channel support)
  • tick U.S.-based and international sellers doing business in the U.S.

How Our Ecommerce Bookkeeping Works

Step 1

Free Quote

Share channel mix, order volume, and goals. Get a flat-rate plan.

Step 2

Secure Connect

Connect Amazon, Shopify, and banks; import settlements & orders.

Step 3

Map & Reconcile

Map fees/returns/tax, post COGS & inventory, reconcile payouts.

Step 4

Close & Report

Month-end close, management reports, and CPA review every month.

Client Reviews

We support business owners across the country with reliable, remote bookkeeping. Here’s what a few of them say:

We used Bench, but this service is 10x better for e-com.

Scott I, Project Manager

Sales tax, refunds, and shipping, all tracked and reconciled.

Green A, Logistics Consultant

Clean books. No missed deposits. No spreadsheet nightmares.

Williams A, Finance Manager

Trusted by thousands of businesses — see what our customers say.

Read all reviews

Frequently Asked Questions

No problem. We track both inventory models and categorize revenue properly.

Yes. We categorize and reconcile all return-related activity properly.

Yes. We support seller sales tax tracking across all 50 states.

Most clients are onboarded within 48 hours.

Yes. Monthly P&L and Balance Sheets are included and CPA-reviewed.

Fully remote, serving sellers nationwide.

Yes. We work alongside your system or exports for accurate COGS tracking.

Yes. We support both QuickBooks and Xero, including marketplace payout reconciliation.

Yes. We support U.S.-based sellers and international sellers operating in the U.S.

Yes. We support multi-channel reconciliation, including fees and returns.

See more answers in our full Bookkeeping Services for Amazon and Shopify Sellers FAQ →

Trusted by Sellers Nationwide

We support Amazon and Shopify sellers in all 50 states - and beyond.

Start your first month free - marketplace-ready, CPA-reviewed, fully remote.

Get a Free Quote

Why Small Businesses Trust RemoteBooksOnline

Used by 300+ CPA and bookkeeping firms Trusted by 5000+ business owners and 300+ firms
CPA-reviewed accuracy CPA-reviewed accuracy
Flat monthly pricing Flat monthly pricing

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