Bookkeeping Services for Amazon and Shopify Sellers, CPA-Reviewed, Flat-Rate
Ecommerce bookkeeping done for you - accurate, timely, sales-tax-ready.
At a glance: Amazon & Shopify payout reconciliation • Fees/returns/chargebacks mapping • COGS & inventory (SKU-level) • Sales-tax support (multi-state) • A/R & A/P • Month-end close & CPA review • QuickBooks & Xero support • Flat-rate monthly
Request a QuoteBookkeeping for Amazon and Shopify Sellers, Stay Synced, Scalable, and Sales-Tax Compliant
We use AI-assisted categorization and reconciliation to map marketplace fees/returns, speed payout matching, and flag anomalies, then a CPA reviews every month-end report.
E-commerce bookkeeping isn’t just about tracking revenue, it’s about reconciling multiple payment gateways, fees, returns, sales tax liabilities, and inventory across platforms like Amazon and Shopify. RemoteBooksOnline delivers flat-rate, CPA-reviewed bookkeeping specifically designed for sellers managing orders, payouts, and marketplace integrations. Whether you're fulfilling from your garage or scaling a multi-brand DTC empire, our team ensures your financials stay accurate, tax-ready, and investor-friendly, month after month, without the guesswork. Get clean books, detailed reports, and full visibility into your e-commerce performance with no hourly billing or software learning curves.
Why Sellers Choose Us

Reconcile Amazon and Shopify payouts

Track COGS, shipping, returns, fees, and inventory

Sales tax prep support across states

CPA-reviewed financials delivered monthly

QuickBooks Online & Desktop support included
Start your first month free - marketplace-ready, CPA-reviewed, fully remote.
Who We Serve
Amazon FBA and FBM sellers
Shopify store owners
Etsy, Walmart, and eBay sellers (multi-channel support)
U.S.-based and international sellers doing business in the U.S.
How Our Ecommerce Bookkeeping Works
Free Quote
Share channel mix, order volume, and goals. Get a flat-rate plan.
Secure Connect
Connect Amazon, Shopify, and banks; import settlements & orders.
Map & Reconcile
Map fees/returns/tax, post COGS & inventory, reconcile payouts.
Close & Report
Month-end close, management reports, and CPA review every month.
Client Reviews
We support business owners across the country with reliable, remote bookkeeping. Here’s what a few of them say:
We used Bench, but this service is 10x better for e-com.
Scott I, Project Manager
Sales tax, refunds, and shipping, all tracked and reconciled.
Green A, Logistics Consultant
Clean books. No missed deposits. No spreadsheet nightmares.
Williams A, Finance Manager
Frequently Asked Questions
What if I sell on Amazon FBA and FBM?
No problem. We track both inventory models and categorize revenue properly.
Can you handle returns and refunds reporting?
Yes. We categorize and reconcile all return-related activity properly.
Can I get help with sales tax summaries nationwide?
Yes. We support seller sales tax tracking across all 50 states.
How quickly can I start?
Most clients are onboarded within 48 hours.
Can I get monthly profit and margin reports?
Yes. Monthly P&L and Balance Sheets are included and CPA-reviewed.
Is this bookkeeping remote or local nationwide?
Fully remote, serving sellers nationwide.
Can you work with inventory tracking tools or spreadsheets?
Yes. We work alongside your system or exports for accurate COGS tracking.
Do you work with QuickBooks or Xero?
Yes. We support both QuickBooks and Xero, including marketplace payout reconciliation.
Do you support sellers outside the U.S.?
Yes. We support U.S.-based sellers and international sellers operating in the U.S.
Can you reconcile payouts from Amazon, Shopify, and Etsy?
Yes. We support multi-channel reconciliation, including fees and returns.
See more answers in our full Bookkeeping Services for Amazon and Shopify Sellers FAQ →
Trusted by Sellers Nationwide
We support Amazon and Shopify sellers in all 50 states - and beyond.
Start your first month free - marketplace-ready, CPA-reviewed, fully remote.
Featured Insights
See how virtual bookkeeping works, where it’s growing, and why businesses are choosing CPA-reviewed support.
Explore Bookkeeping for Amazon & Shopify Sellers by Location
Need Bookkeeping for Amazon and Shopify sellers help near you? View all locations.
Why Small Businesses Trust RemoteBooksOnline



Our medical and dental bookkeeping ensures HIPAA-compliant financials and simplified insurance reconciliation.
Our bookkeeping services near you help nonprofits stay donor-ready, audit-compliant, and financially organized.
Tax professionals and CPAs rely on our QuickBooks bookkeeping services to streamline financials and scale their practices efficiently.